Controlling the shape and chirality of an eight-crossing molecular knot
نویسندگان
چکیده
Knots are ubiquitous in the macroscopic world, with uses ranging from tying shoelaces to fishing, and they transform properties of thing that is tied. similarly found at nanoscale: for example, proteins DNA, also man-made polymers. These molecular entanglements, likewise, control molecules which tied—chain breakage polymers occurs most readily knotted point, knotting biomolecules can enhance stability. Herein, we describe formation a knot eight crossing points via one-pot self-assembly pair simple starting materials single metal salt. Further, as 819 form intrinsically topologically chiral, show diastereoselectively by using an enantiopure building block, allowing us use point chirality topological this complex architecture. •Subcomponent generates architecture crossings•Peripheral centers enforce additional nugatory crossings•The metal-organic be demetallated, forming organic loop 240 atoms•We chirality, enabling diastereoselective synthesis The impacts their function enables them carry out new tasks. Likewise, topologies underpin operation many synthetic machines. ability generate more architectures essential endow these machines advanced functions. Here, report points, consisting woven about six templating centers, dialdehyde diamine subcomponents structure topology were established NMR spectroscopy, mass spectrometry, X-ray crystallography. Upon demetallation, purely strand relaxes into symmetric conformation, while retaining original knot. This chiral may synthesized through block. one oldest technologies, having been used thousands years tied.1Huurre M. 9000 Vuotta Suomen Esihistoriaa (Otava).1979Google Scholar At level, knots biology DNA,2Su?kowska J.I. Rawdon E.J. Millett K.C. Onuchic J.N. Stasiak A. Conservation slipknotting patterns proteins.Proc. Natl. Acad. Sci. USA. 2012; 109: E1715-E1723Crossref PubMed Scopus (158) Google Scholar,3Lui L.F. Lui C.-C. Alberts B.M. Type II DNA topoisomerases: enzymes unknot reversible double-strand break.Cell. 1980; 19: 687-707Google spontaneously sufficiently long polymer chains.4Frank-Kamenetskii M.D. Lukashin A.V. Vologodskii Statistical mechanics chains.Nature. 1975; 258: 398-402Crossref (171) Scholar,5Jones C.D. Simmons H.T.D. Horner K.E. Liu K. Thompson R.L. Steed J.W. Braiding, branching amplification nanofibres supramolecular gels.Nat. Chem. 2019; 11: 375-381Crossref (37) Chain systems point,6Saitta A.M. Soper P.D. Wasserman E. Klein M.L. Influence on strength strand.Nature. 1999; 399: 46-48Crossref (174) whereas together HK97 viral capsid renders it robust.7Wikoff W.R. Liljas L. Duda Tsuruta H. Hendrix R.W. Johnson J.E. Topologically linked protein rings bacteriophage capsid.Science. 2000; 289: 2129-2133Crossref (528) Knotting level thus has major effects upon material properties.8Liu Y. Ma Zhao Sun X. Gándara F. Furukawa Z. Zhu C. Suenaga et al.Weaving threads crystalline covalent framework.Science. 2016; 351: 365-369Crossref (263) Scholar,9Wu Q. Rauscher P.M. Lang Wojtecki R.J. de Pablo J.J. Hore M.J.A. Rowan S.J. Poly[n]catenanes: interlocked chains.Science. 2017; 358: 1434-1439Crossref (104) Since Sauvage’s first full characterization three decades ago,10Dietrich-Buchecker C.O. Sauvage J.-P. A trefoil knot.Angew. Int. Ed. Engl. 1989; 28: 189-192Crossref (392) beauty attracted chemists,11Fielden S.D.P. Leigh D.A. Woltering S.L. Molecular knots.Angew. 56: 11166-11194Crossref (156) leading recent breakthroughs complex, highly knots,12Danon Krüger Lemonnier J.F. Stephens A.J. Vitorica-Yrezabal I.J. Braiding crossings.Science. 355: 159-162Crossref (151) Scholar, 13Ayme Beves J.A. McBurney R.T. Rissanen Schultz D. pentafoil knot.Nat. 2011; 4: 15-20Crossref (288) 14Ponnuswamy N. Cougnon F.B.L. Clough J.M. Panto? G.D. Sanders J.K.M. Discovery knot.Science. 338: 783-785Crossref (212) 15Kim D.H. Singh Oh J. Kim E.H. Jung Chi K.W. Coordination-driven comprising sixteen crossings.Angew. 2018; 57: 5669-5673Crossref (52) 16Inomata Sawada T. Fujita Metal-peptide torus flexible short peptides.Chem. 2020; 6: 294-303Abstract Full Text PDF (42) 17Sawada Inomata Shimokawa metal-peptide capsule multiple ring threading.Nat. Commun. 10: 5687Crossref (24) 18Sawada Saito Tamiya Hisada entangled inequivalent frameworks same ring- crossing-numbers.Nat. 921Crossref (32) investigations functions.19Marcos V. Jaramillo-Garcia Nussbaumer A.L. Valero Allosteric initiation regulation catalysis 352: 1555-1559Crossref (139) Scholar,20Leigh Pirvu Schaufelberger Tetlow D.J. Zhang Securing stopper 10484-10488Crossref (27) To date, routes links have focused preparation few such three-crossing knot.21Hunter C.A. Mayers P.C. Knot tied around octahedral centre.Nature. 2001; 411: 763Crossref (72) 22Cougnon Caprice Pupier Bauzá Frontera strategy synthesize hydrophobic effect.J. Am. Soc. 140: 12442-12450Crossref (39) 23Feigel Ladberg R. Engels S. Herbst-Irmer Fröhlich made amino acids steroids.Angew Chem Int Ed 2006; 45: 5698-5702Crossref 24Guo Breault G.A. Hunter Synthesis folding closing coordination template.Nat. 2010; 2: 218-222Crossref (115) 25Barran P.E. Cole H.L. Goldup S.M. McGonigal P.R. Symes Wu J.Y. Zengerle Active-metal template 50: 12280-12284Crossref (109) 26Prakasam Lusi Elhabiri Platas-Iglesias Olsen J.-C. Asfari Cianférani-Sanglier Debaene Charbonnière L.J. Trabolsi Simultaneous [2]catenane, knot, Solomon link ligands.Angew. 2013; 52: 9956-9960Crossref (66) 27Ayme Gil-Ramírez G. Markevicius Muryn Lanthanide knot.J. 2014; 136: 13142-13145Crossref 28Leigh Stereoselective square granny knots.J. 141: 6054-6059Crossref (23) 29Dietrich-Buchecker Rapenne Efficient copper(I)-induced precursor followed ruthenium(II)-catalysed metathesis.Chem. 1997; : 2053-2054Crossref (110) 30Ponnuswamy Homochiral meso figure link.J. 8243-8251Crossref (91) Symmetrical higher order up nine recently prepared,31Zhang Jur?ek P. composite crossings.Nat. 1083-1088Crossref often based circular helicate approach pioneered group.32Beves Danon interwoven grid.Angew. 2015; 54: 7555-7559Crossref (70) Scholar,33Ayme Campbell C.J. self-sorting behavior helicates links.Angew. 53: 7823-7827Crossref (61) increasingly catalysis,19Marcos Scholar,34Gil-Ramírez Hoekman Kitching M.O. Tying overhand handedness asymmetric corresponding pseudo-D3-symmetric 138: 13159-13162Crossref (51) strong specific anion binding.35Ayme Strong selective binding within central cavity links.J. 137: 9812-9815Crossref (55) Many possessing arises way strands together. Given critical nature technology,36Gardner Ambidextrous Universe: Symmetry Asymmetry, Mirror Reflections Superstrips.3rd ed. W. Freeman Company, 1990Google Scholar,37Brandt J.R. Salerno Fuchter M.J. added value small-molecule technological applications.Nat. Rev. 10045Crossref (202) anticipated enable progressively applications.38Keene R.F. Chirality Supramolecular Assemblies: Causes Consequences. John Wiley & Sons, 2016Crossref (16) Scholar,39Maynard J.R.J. Strategies mechanically molecules.Chem. 1914-1932Abstract (17) stereoselective achieved knots,40Perret-Aebi L.E. von Zelewsky Dietrich-Buchecker J.P. molecule: 2004; 43: 4482-4485Crossref (79) Scholar,41Zhang Browne handedness.J. 10437-10442Crossref (58) formed combinations knots,28Leigh Scholar,31Zhang but no route yet reported. single-step knot.12Danon was step subcomponent diamine, dialdehyde, reduction relaxed higher-symmetry configuration. Furthermore, embedding remote stereocenters enabled over product. reported herein consists weaves continuous path centers. molecule prepared either process, or stepwise fashion pre-assembled grid enhanced yield. Subcomponent (Figure 1) shown self-assemble p-toluidine different salts produce family structurally distinct architectures.42Riddell I.A. Smulders M.M. Clegg J.K. Hristova Y.R. Breiner B. Thoburn J.D. Nitschke Anion-induced reconstitution self-assembling system express chloride-binding Co10L15 pentagonal prism.Nat. 751-756Crossref (196) 43Riddell Wood C.S. Five discrete multinuclear assemblies ligand: deciphering templates.J. 135: 2723-2733Crossref (114) 44Riddell Ronson T.K. Bilbeisi R.A. Cation- anion-exchanges induce rearrangements metallosupramolecular architectures.J. 9491-9498Crossref (62) One M6L8 (where M = CoII, NiII, ZnII) extended 1 1, Zn-1). In bis-bidentate ligands weave trifluoromethanesulfonate (triflate, TfO-) essential, triflate anions bound peripheral ions help stabilize alternative structures. Within certain pairs aniline residues spatially closer than others. Noting each proximal anilines attached reasoned linking might yield entangled, species. models suggested optimal linker length requirements would met triethylene glycol chain bis-para-substituted dianiline B (Section S7). reaction (8 equiv) zinc(II) (6 acetonitrile 90°C produced Zn-2, ESI-MS analyses consistent Figure S3). Preparing Zn-2 directly its pathway iii) led small amount insoluble precipitate, infer kinetically trapped polymeric material. We therefore hypothesized ii) exchange Zn-1, incorporating electron-poor 4-chloroaniline, avoid side products.45Wood Belenguer Holstein Two-stage directed cyclic [3]catenane.Nat. 7: 354-358Crossref (129) isolated increase 72%, direct assembly, 92% Zn-1 4-chloroaniline S4). Slow diffusion diisopropyl ether solution provided yellow crystals suitable analysis single-crystal diffraction. solid-state unambiguously confirmed 2 corresponds ligand atoms itself times. linkers two environments (for further details, see Section S3), highlighted pink orange 1. approximately coplanar. four cations pyridyl-imine groups, coordinated units, well anions, satisfy environment. Both enantiomers observed crystal, center inversion. similar result obtained iron(II) acetonitrile, yielding Fe-2 S5). possess crystallography S13). As congener, spheres completed anions. low field stabilizes high-spin state reflected longer Fe-N bond lengths 2.15 ± 0.04 Å. character caused exhibit paramagnetism, seen 1H spectrum contrast, inner adopted low-spin due groups each, shorter 1.98 0.03 Å.45Wood group equivalent eight-crossing possesses D4 symmetry.12Danon Scholar,46Zhang Acocella Calvaresi Zerbetto Effects tightness level.Proc. 116: 2452-2457Crossref metallated D2 symmetry appears, inspection, 16 total 2B). Eight nugatory: loops moved past other so effect removal without breaking re-joining 2B; Video S1). manipulations referred Reidemeister moves S6), representation altering topology.11Fielden Every deformed configuration exhibits minimal number possible points. 2B shows simplest representation: S6). https://www.cell.com/cms/asset/b9435513-0819-4d74-afb6-38525ec89b3c/mmc2.mp4Loading ... Download .mp4 (0.65 MB) Help files S1. Transformation Such conformation part conformational space accessible fully organic, non-labile 3 S14; S2), demetallation 3). Reduction BH3?THF acetonitrile:methanol (5:1, v:v) mixture transformation labile imine linkages holding parent fixed secondary amines,47Lavendomme Metal templates size macrocycles cages.J. 12147-12158Crossref 3, spectrometry S8). contrast 24 aromatic resonances 3B), only five 3C). constitutionally sections reside magnetically environments.12Danon Variable temperature experiments showed equivalence persist range 25°C ?50°C https://www.cell.com/cms/asset/cb94e1e2-3905-4f9a-9222-72b3f51af760/mmc3.mp4Loading (8.04 S2. Dynamics simulation inherently property resulting spatial connectivity. When achiral incorporated, expected racemic obtained. could distinguished adding tetrabutylammonium salt Lacour’s ?-TRISPHAT Zn-2,48Favarger Goujon-Ginglinger Monchaud Lacour Large-scale resolution TRISPHAT [Tris(tetrachlorobenzenediolato) phosphate(V)] anion.J. Org. 69: 8521-8524Crossref (75) separate enantiomer S9). lead handedness.25Barran Scholar,49Greenfield J.L. Evans E.W. Di Nuzzo Antonio Friend R.H. Unraveling mechanisms induction double-helical metallopolymers.J. 10344-10353Crossref (31) dianilines C-(1R,2R) C-(1S,2S) S10). provide similar-length resulted Fe-4-(1R,2R), evidenced high ESI (Figures S44 S45). paramagnetic Fe-4-(1R,2R) S41) Fe-2, case Fe-4-(1S,2S), S11; S43). Circular dichroism (CD) spectroscopy gauge stereoselectivity Fe-4-(1S,2S). CD spectra bands equal opposite intensity intense bisignate MLCT centered 581 nm 4B). Equal signals recorded confirms presence non-racemic stereogenic indicates contains ? iron Fe-4-(1S,2S) ?.50Howson S.E. Allan L.E.N. Chmel N.P. Clarkson G.J. van Gorkum Scott Self-assembling optically pure Fe(A-B)3 chelates.Chem. 2009; 13: 1727-1729Crossref (73) 51Howson Deeth Faulkner A.D. Simpson Origins phenylethaniminopyridine tris-chelates M(NN?)3n+ (M Mn, Fe, Co, Ni Zn).Dalton Trans. 40: 10416-10433Crossref 52Knof U. Predetermined centers.Angew. 38: 302-322Crossref (490) Only set peaks apparent S11). observations indicate stereochemical information cyclohexane effectively communicated during self-assembly, thereby favored stereoisomer. While clear stereoinduction (reinforced diamagnetic Zn-4 vide infra, Figures S47 S48), cannot precisely quantify extent system. Stereochemical transmission occurred efficiently least 10 dictate units acting unison exert control. Zinc(II)-templated Zn-4-(1R,2R) Zn-4-(1S,2S) analogous process S12). diastereomer again revealed S57). successful reductive simple, one-pot, high-yielding procedure highlights power species topology.13Ayme Scholar,45Wood Scholar,53Chichak K.S. Cantrill Pease A.R. Chiu S.H. Cave G.W.V. Atwood Stoddart Borromean rings.Science. 304: 1308-1312Crossref (616) shape geometric will our probe fundamental entanglements level. inform development nanoscale materials, devices, future innovations field.
منابع مشابه
an investigation about the relationship between insurance lines and economic growth; the case study of iran
مطالعات قبلی بازار بیمه را به صورت کلی در نظر می گرفتند اما در این مطالعه صنعت بیمه به عنوان متغیر مستفل به بیمه های زندگی و غیر زندگی شکسته شده و هم چنین بیمه های زندگی به رشته های مختلف بیمه ای که در بازار بیمه ایران سهم قابل توجهی دارند تقسیم میشود. با استفاده از روشهای اقتصاد سنجی داده های برای دوره های 48-89 از مراکز ملی داده جمع آوری شد سپس با تخمین مدل خود بازگشتی برداری همراه با تعدادی ...
15 صفحه اولStudy of the Shape Controlling Silver Nanoplates by Reduction Process
In this work, we report synthesis of silver nanoplates by a simple reduction process of silver nitrate in the presence of polyvinyl alcohol (PVA) and N,N'-dimethyl formamide (DMF). The Characterization of the samples were carried out using X-ray diffraction (XRD), Transmission-electron microscopy (TEM) and UV-vis spectroscopy. Absorption spectra of the nanoplates in comparison with that of the ...
متن کاملnano-rods zno as an efficient catalyst for the synthesis of chromene phosphonates, direct amidation and formylation of amines
چکیده ندارد.
Study of the Shape Controlling Silver Nanoplates by Reduction Process
In this work, we report synthesis of silver nanoplates by a simple reduction process of silver nitrate in the presence of polyvinyl alcohol (PVA) and N,N'-dimethyl formamide (DMF). The Characterization of the samples were carried out using X-ray diffraction (XRD), Transmission-electron microscopy (TEM) and UV-vis spectroscopy. Absorption spectra of the nanoplates in comparison with that of the ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Chem
سال: 2021
ISSN: ['2451-9308', '2451-9294']
DOI: https://doi.org/10.1016/j.chempr.2021.03.005